Log In
|
Site
Web
Search
Home
About
About the Society
Operation and Funding
Our Mission
Committee Members
Constitution of the Genetics Society
Local Representatives
Annual General Meeting
Medals and Lectures
History of the Genetics Society
Past Presidents of the Society
Honorary Member Biographies
Funding
Funding Application Form
One-off Meeting Sponsorship
Junior Scientist Grants
New Sectional Interest Group
Heredity Fieldwork Grant
Genes and Development summer studentships
The Genetics Society Training Grant
Sir Kenneth Mather Memorial Prize
Case Study - a successful grant applicant
Education
What is Genetics
What do Geneticists do?
Who do Geneticists work for?
How do I become a Geneticist?
Careers in Genetics
News
Latest Naked Genetics Podcast
Society of Biology Science Communication Awards
Committee Vacancies
Naked Genetics Launched!
2013 Genetics Society Medal
The 2013 Balfour Lectureship
Life Membership in the Genetics Society
Data archiving progress at Heredity
Young Geneticist Wins Science, Engineering and Tec
The Heredity Podcasts are back!
Become the next Postgraduate Representative!
Heredity Podcast Competition
Genetics Society Committee Member Honoured
Genetics Society AGM 2012
Events
Future Genetics Society Meetings
Past Conferences & Workshops
External meetings
Sectional Interest Groups
Events Calendar
Gallery
Membership
About Membership
Join Online
Honorary Members
Publications
Genetic Society News
Heredity
Genes and Development
Forum
Data archiving progress at Heredity
It says the following:
"Authors are strongly encouraged to follow established minimum guidelines for the reporting of biological data, wherever appropriate. Guidelines for many relevant data types are available from MIBBI: Minimum Information for Biological and Biomedical Investigations (
http://www.mibbi.org/
).
DNA sequences published in Heredity must be deposited in a publicly available database, usually EMBL / GenBank / DDBJ, and accession numbers must be included in the final version of the manuscript. Where public databases exist for other data types, such as microarray data (see
www.ebi.ac.uk/Databases/microarray.html
, for example), they must be used and the relevant reference should be included in the manuscript. Where no public database exists, authors are strongly encouraged to provide the data on which their analyses are based as Electronic Supplementary Information. The data should be formatted for use in a relevant, readily available software package, ideally one which allows data export in a variety of formats (such as CREATE for population genetic data:
https://bcrc.bio.umass.edu/pedigreesoftware/node/2
). Sufficient metadata (such as sample locations, individual identities, etc.) should be provided to allow easy repetition of analyses presented in the manuscript.
Heredity proposes to make public archiving of data a requirement for publication in the near future and welcomes feedback from authors on this proposal (please address comments to
heredity@shef.ac.uk
)."
Readers will immediately notice the difference between ‘must be deposited’ for sequence and microarray data and the rather different ‘strongly encouraged’ for other data types. This reflects the uncertainty discussed by our Newsletter Editor, Steve Russell in his TaxiDriver piece (Issue 61): we have all benefitted enormously from the universal archiving of sequence data in GenBank, and almost all scientists agree that the data on which published papers are based should be available for re-analysis or further study, but we are not sure how far to extend mandatory archiving to other data types.
Heredity introduced this interim policy because there were several concerns about rapidly adopting mandatory archiving. It would be good to take a lead on this issue but might be risky if other journals were not adopting similar policies. It is not clear that Supplementary Information provides a suitable archive where data can be stored in a useable form and easily retrieved. A suitable archive should also allow temporary embargoes on some data types, to allow authors to exploit their data more fully before release or to protect sensitive information. An ideal archive should allow easy submission of many data types, with metadata, integrated with the manuscript submission process.
The outlook is now changing rapidly. Several major journals in ecology and evolutionary biology (American Naturalist, Evolution, Molecular Ecology, Journal of Evolutionary Biology) have joined together in a joint data archiving initiative. Heredity’s field of interest overlaps substantially with these journals and the policy they propose to adopt fits closely with our planned development. Therefore, we will join the other journals in publishing closely linked statements on data archiving early in 2010. This will make archiving of all data types a requirement for publication. We will be expecting referees and editors to police this requirement: a small extra load, I am afraid, but one that will be well worth the effort.
These journals are also supporting an initiative by NESCENT, the US National Evolutionary Synthesis Center (
http://www.nescent.org/
) to create a data repository suitable for the very varied forms of data generated in evolutionary biology, including evolutionary genetics. The result is DRYAD (
http://datadryad.org/
). Dryad operates like a data library, allowing it to contain any data type but restricting the types of searches that are possible compared with sequence data, for example. Data submission can be linked to the electronic manuscript submission systems of member journals. Embargoes can be requested. There is basic curation of data and metadata files and the data are given a unique identifier which is linked to the appropriate publication. The joint data archiving initiative will recommend Dryad as a data repository but will not restrict the use of other repositories. The Genetics Society Committee is currently considering whether to join the Dryad Consortium. If you have views on Dryad, or data archiving more generally, pleased do contact me or any committee member.
News
Other pages in the News section that you may be interested in:
Latest Naked Genetics Podcast
Society of Biology Science Communication Awards
Committee Vacancies
Naked Genetics Launched!
2013 Genetics Society Medal
The 2013 Balfour Lectureship
Life Membership in the Genetics Society
Data archiving progress at Heredity
Young Geneticist Wins Science, Engineering and Tec
The Heredity Podcasts are back!
Become the next Postgraduate Representative!
Heredity Podcast Competition
Genetics Society Committee Member Honoured
Genetics Society AGM 2012
© The Genetics Society 2011
VAT No: 270 6333 72
Registered Charity No: 261062 SC038492
Contact
Terms and Conditions
Data Protection Policy